Through games of Sunday March 13, 2016
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Cortland (25) | 11-0 | 625 | 1 |
| 2 | Trinity (Texas) | 16-4 | 555 | 4 |
| 3 | Birmingham-Southern | 15-3 | 544 | 5 |
| 4 | Emory | 15-5 | 503 | 3 |
| 5 | UW-La Crosse | 2-2 | 479 | 2 |
| 6 | Randolph-Macon | 13-2 | 463 | 9 |
| 7 | Southern Maine | 2-0 | 420 | 10 |
| 8 | Shenandoah | 10-3 | 415 | 6 |
| 9 | UW-Whitewater | 0-0 | 404 | 7 |
| 10 | Salisbury | 8-3 | 365 | 13 |
| 11 | Frostburg State | 7-3 | 343 | 8 |
| 12 | Ramapo | 6-0 | 341 | 15 |
| 13 | UW-Stevens Point | 0-0 | 328 | 11 |
| 14 | Whitworth | 14-4 | 288 | 14 |
| 15 | Christopher Newport | 12-3 | 269 | 17 |
| 16 | Oswego State | 8-1 | 211 | 23 |
| 17 | Mary Washington | 13-5 | 209 | 12 |
| 18 | Texas-Tyler | 12-6 | 168 | 16 |
| 19 | Wooster | 0-0 | 140 | 20 |
| 20 | Concordia-Chicago | 8-3 | 129 | 21 |
| 21 | Piedmont | 14-5 | 109 | - |
| 22 | Washington (Mo.) | 12-4 | 81 | rv |
| 23 | St. Thomas | 0-0 | 71 | rv |
| 24 | Centenary (La.) | 14-3 | 70 | rv |
| 25 | Rutgers-Camden | 4-0 | 69 | rv |
Dropped out: No. 18 Marietta, No. 19 Webster, No. 22 Berry, No. 24 Wartburg, No. 25 Linfield.
Others receiving votes: Berry 66, Marietta 65, Maryville (Tenn.) 49, Mt. St. Joseph 45, Wartburg 41, Misericordia 32, Webster 27, Rhodes 25, Buena Vista 22, La Verne 18, La Roche 16, Kean 14, Keystone 12, Linfield 12, Ohio Northern 10, Carthage 9, Heidelberg 9, Endicott 7, Denison 5, Amherst 5, Haverford 5, Swarthmore 4, Western New England 4, Mitchell 4, Penn St.-Berks 4, Coe 3, Pacific Lutheran 3, Roanoke 3, Cal Lutheran 2, Thiel 2, Redlands 1, St. John Fisher 1, St. Scholastica 1.
The D3baseball.com Top 25 is voted on by a panel of 25 Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.