Through games of Sunday, May 4, 2025
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Johns Hopkins (24) | 39-3 | 624 | 1 |
| 2 | UW-Whitewater (1) | 34-4 | 584 | 2 |
| 3 | Denison | 32-5 | 565 | 4 |
| 4 | Endicott | 35-4 | 560 | 3 |
| 5 | Lynchburg | 35-6 | 524 | 5 |
| 6 | Trinity (Texas) | 36-7 | 491 | 8 |
| 7 | Kean | 35-7 | 452 | 6 |
| 8 | UW-La Crosse | 33-7 | 423 | 10 |
| 9 | Salisbury | 30-8 | 400 | 9 |
| 10 | Salve Regina | 29-7 | 400 | 11 |
| 11 | La Verne | 31-8 | 391 | 7 |
| 12 | Brockport | 33-3-2 | 343 | 12 |
| 13 | Rowan | 31-8 | 332 | 13 |
| 14 | Webster | 33-7 | 288 | 14 |
| 15 | Centre | 29-8 | 263 | 16 |
| 16 | Claremont-Mudd-Scripps | 30-10 | 241 | 15 |
| 17 | Gustavus Adolphus | 33-7 | 216 | 18 |
| 18 | Case Western Reserve | 27-12-1 | 207 | 17 |
| 19 | Penn State-Harrisburg | 31-9-1 | 148 | 21 |
| 20 | Concordia (Texas) | 33-11 | 118 | 20 |
| 21 | Mount Union | 27-9 | 92 | 23 |
| 22 | Pomona-Pitzer | 27-13 | 81 | 24 |
| 23 | Cal Lutheran | 27-13 | 76 | 19 |
| 24 | Keystone | 31-9 | 68 | 25 |
| 25 | UW-Oshkosh | 29-11 | 56 | rv |
Dropped out: No. 22 Coe.
Others receiving votes: Cortland 31; Millsaps 28; Coe 19; TCNJ 18; Belhaven 14; Emory 14; Buena Vista 12; Penn St.-Behrend 10; Maryville (Tenn.) 6; Gettysburg 5; McMurry 5; Chicago 4; East Texas Baptist 4; Ohio Northern 3; Bethel (Minn.) 2; Randolph-Macon 1; Washington (Mo.) 1; Wilkes 1.
The D3baseball.com Top 25 is voted on by a panel of 25 Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.