Through games of Sunday, April 27, 2025
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Johns Hopkins (14) | 36-3 | 609 | 2 |
| 2 | UW-Whitewater (10) | 31-3 | 601 | 1 |
| 3 | Endicott (1) | 30-3 | 572 | 3 |
| 4 | Denison | 29-5 | 542 | 5 |
| 5 | Lynchburg | 33-6 | 534 | 4 |
| 6 | Kean | 34-6 | 492 | 6 |
| 7 | La Verne | 29-6 | 454 | 7 |
| 8 | Trinity (Texas) | 33-7 | 441 | 8 |
| 9 | Salisbury | 29-7 | 426 | 9 |
| 10 | UW-La Crosse | 29-7 | 391 | 10 |
| 11 | Salve Regina | 25-7 | 362 | 13 |
| 12 | Brockport | 30-3-2 | 324 | 12 |
| 13 | Rowan | 29-8 | 287 | 17 |
| 14 | Webster | 31-7 | 269 | 16 |
| 15 | Claremont-Mudd-Scripps | 28-9 | 252 | 11 |
| 16 | Centre | 27-8 | 238 | 15 |
| 17 | Case Western Reserve | 25-12-1 | 177 | 21 |
| 18 | Gustavus Adolphus | 29-7 | 171 | 19 |
| 19 | Cal Lutheran | 25-11 | 146 | 14 |
| 20 | Concordia (Texas) | 31-9 | 146 | 22 |
| 21 | Penn State-Harrisburg | 29-9-1 | 139 | 20 |
| 22 | Coe | 27-8 | 132 | 18 |
| 23 | Mount Union | 24-8 | 81 | 23 |
| 24 | Pomona-Pitzer | 24-12 | 71 | rv |
| 25 | Keystone | 28-8 | 53 | rv |
Dropped out: No. 24. East Texas Baptist; No. 25 Bethel (Minn.)
Others receiving votes: Millsaps 38, Maryville (Tenn.) 29; UW-Oshkosh 24; Gettysburg 22; Babson 14; Penn State-Behrend 14; Bethel (Minn.) 13; Carthage 12; Belhaven 11; McMurry 11; Emory 8; Chicago 4; East Texas Baptist 3; Buena Vista 2; Wittenberg 2; Cortland 1; Randolph-Macon 1.
The D3baseball.com Top 25 is voted on by a panel of 25 Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.