Through games of Sunday April 28, 2013
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Linfield (22) | 32-5 | 622 | 1 |
| 2 | St. Thomas (2) | 22-4 | 578 | 4 |
| 3 | Cortland State | 31-8 | 520 | 6 |
| 4 | UW-Whitewater | 28-5 | 516 | 7 |
| 5 | Kean (0) | 30-8 | 502 | 2 |
| 6 | Johns Hopkins (1) | 33-5 | 492 | 3 |
| 7 | Salisbury | 30-7 | 478 | 5 |
| 8 | Trinity (Texas) | 36-7 | 452 | 9 |
| 9 | Marietta | 24-8 | 451 | 8 |
| 10 | Webster | 29-7 | 366 | 10 |
| 11 | Cal Lutheran | 31-7-1 | 341 | 11 |
| 12 | Keystone | 29-7 | 327 | 14 |
| 13 | Manchester | 28-5-1 | 295 | 15 |
| 14 | Wheaton (Mass.) | 27-10 | 293 | 12 |
| 15 | Ithaca | 30-6 | 287 | 18 |
| 16 | Southern Maine | 29-6 | 259 | 13 |
| 17 | Texas-Tyler | 32-10 | 230 | 17 |
| 18 | Wartburg | 28-6 | 157 | 20 |
| 19 | Bridgewater (Va.) | 31-9 | 149 | 23 |
| 20 | Illinois Wesleyan | 26-7 | 137 | 24 |
| 21 | Augustana | 26-8 | 130 | 16 |
| 22 | Concordia (Ill.) | 27-5 | 104 | 22 |
| 23 | UW-Stevens Point | 24-7 | 103 | rv |
| 24 | Christopher Newport | 29-12-1 | 78 | 21 |
| 25 | Millsaps | 32-11 | 53 | 25 |
Dropped out: No. 19 Ramapo
Others receiving votes: Western New England 32,
Ramapo 22, Texas Lutheran 21, George Fox 16, Huntingdon 16,
Shenandoah 15, Misericordia 15, Saint Joseph's (Maine) 13,
Birmingham Southern 10, St. Scholastica 8, MIT 7, Gettysburg
4, Rowan 3, Wis.-Oshkosh 2, La Roche 2, Wooster 2, Pomona-Pitzer 2,
Denison 1, Penn St.-Behrend 1.
The D3baseball.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.