Through games of Sunday April 14, 2013
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Linfield (17) | 26-5 | 602 | 2 |
| 2 | Johns Hopkins (4) | 26-2 | 571 | 5 |
| 3 | Kean (2) | 24-6 | 565 | 1 |
| 4 | St. Thomas (2) | 16-4 | 526 | 4 |
| 5 | Salisbury | 23-6 | 521 | 3 |
| 6 | Marietta | 17-6 | 464 | 6 |
| 7 | Cortland State | 21-8 | 393 | 7 |
| 8 | UW-Whitewater | 18-4 | 389 | 11 |
| 9 | Manchester | 23-3-1 | 343 | 14 |
| 10 | Webster | 22-6 | 336 | 15 |
| 11 | Wheaton (Mass.) | 21-7 | 331 | 12 |
| 12 | Texas-Tyler | 29-8 | 281 | 16 |
| 13 | Trinity (Texas) | 29-7 | 280 | 10 |
| 14 | Ramapo | 18-5-1 | 278 | 9 |
| 15 | Keystone | 21-7 | 264 | 13 |
| 16 | Cal Lutheran | 25-6-1 | 256 | 18 |
| 17 | Christopher Newport | 28-11-1 | 238 | 8 |
| 18 | Southern Maine | 20-3 | 197 | 24 |
| 19 | George Fox | 24-9 | 168 | 17 |
| 20 | Ithaca | 22-4 | 159 | rv |
| 21 | Illinois Wesleyan | 21-5 | 135 | rv |
| 22 | Augustana | 19-5 | 131 | 19 |
| 23 | Millsaps | 26-8 | 80 | rv |
| 24 | UW-Oshkosh | 13-4 | 62 | 21 |
| 25 | Shenandoah | 22-9 | 55 | 25 |
Dropped out: No. 20 Birmingham-Southern, No. 22
Pomona-Pitzer, No 23 UW-Stevens Point.
Others receiving votes: Texas Lutheran 54,
Wartburg 46, Concordia (Ill.) 36, Bridgewater (Va.) 32, Western New
England 31, UW-Stevens Point 31, Birmingham Southern 29, Baldwin
Wallace 23, St. Scholastica 23, Pomona-Pitzer 21, Saint Joseph's
(Me.) 13, Haverford 11, Huntingdon 5, La Roche 3, Washington &
Jefferson 3, Suffolk 2, UW-La Crosse, Wooster 1, Denison 1.
The D3baseball.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.