Through games of Sunday May 5, 2013
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Linfield (19) | 34-6 | 618 | 1 |
| 2 | St. Thomas (2) | 27-5 | 587 | 2 |
| 3 | UW-Whitewater (2) | 30-5 | 567 | 4 |
| 4 | Cortland State (1) | 34-9 | 515 | 3 |
| 5 | Salisbury | 30-7 | 503 | 7 |
| 6 | Trinity (Texas) | 36-7 | 456 | 8 |
| 7 | Cal Lutheran | 34-7-1 | 437 | 11 |
| 8 | Marietta | 28-10 | 387 | 9 |
| 9 | Kean | 32-10 | 373 | 5 |
| 10 | Ithaca | 32-6 | 365 | 15 |
| 11 | Keystone | 33-7 | 362 | 12 |
| 12 | Manchester (1) | 32-5-1 | 354 | 13 |
| 13 | Webster | 29-8 | 338 | 10 |
| 14 | Johns Hopkins | 36-8 | 320 | 6 |
| 15 | Wheaton (Mass.) | 30-10 | 316 | 14 |
| 16 | Southern Maine | 33-7 | 243 | 16 |
| 17 | Texas-Tyler | 35-10 | 225 | 17 |
| 18 | Augustana | 29-8 | 182 | 21 |
| 19 | UW-Stevens Point | 30-8 | 163 | 23 |
| 20 | Concordia (Ill.) | 31-5 | 147 | 22 |
| 21 | Wartburg | 31-9 | 126 | 18 |
| 22 | Bridgewater (Va.) | 33-11 | 99 | 19 |
| 23 | Rowan | 32-12 | 79 | rv |
| 24 | Millsaps | 32-11 | 74 | 25 |
| 25 | Illinois Wesleyan | 29-9 | 52 | 20 |
Dropped out: No. 24 Christopher Newport
Others receiving votes: Christopher Newport 41,
Huntingdon 38, Western New Eng. 25, Misericordia 24, George Fox 19,
Saint Joseph's (Me.) 13, Shenandoah 12, Birmingham Southern 10,
Wooster 9, St. Scholastica 7, Texas Lutheran 7, Case Western
Reserve 6, Ramapo 5, Wis.-Oshkosh 4, Endicott 4, Pomona-Pitzer 2,
Coe 2, Eastern Conn. St. 1, Daniel Webster 1.
The D3baseball.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.