Through end of the 2013 season:
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Linfield (25) | 42-8 | 625 | 1 |
| 2 | Southern Maine | 46-10 | 599 | 14 |
| 3 | Ithaca | 41-8 | 574 | 7 |
| 4 | UW-Stevens Point | 41-11 | 539 | 16 |
| 5 | Kean | 39-13 | 513 | 10 |
| 6 | Webster | 37-12 | 494 | 12 |
| 7 | Manchester | 39-7-1 | 475 | 9 |
| 8 | Millsaps | 38-14 | 426 | 23 |
| 9 | Trinity (Texas) | 40-9 | 403 | 6 |
| 10 | Cortland State | 38-11 | 393 | 3 |
| 11 | Salisbury | 33-9 | 327 | 4 |
| 12 | Keystone | 37-10 | 314 | 11 |
| 13 | St. Thomas | 34-7 | 306 | 2 |
| 14 | Marietta | 32-14 | 274 | 13 |
| 15 | UW-Whitewater | 35-9 | 255 | 5 |
| 16 | Concordia (Ill.) | 39-7 | 226 | 19 |
| 17 | Cal Lutheran | 35-9-1 | 198 | 8 |
| 18 | Texas-Tyler | 37-12 | 189 | 18 |
| 19 | Endicott | 35-14 | 165 | --- |
| 20 | Augustana | 34-11 | 147 | 20 |
| 21 | Case Western Reserve | 29-14 | 125 | --- |
| 22 | Wheaton (Mass.) | 32-12 | 116 | 15 |
| 23 | Johns Hopkins | 37-10 | 97 | 17 |
| 24 | Misericordia | 39-11 | 71 | --- |
| 25 | Huntingdon | 32-11 | 57 | --- |
Dropped Out: No. 21 Wartburg, No. 22 Rowan, No. 24 Bridgewater (Va.), No. 25 Illinois Wesleyan
Also receiving votes: Western New England 47, St. Scholastica 33, Amherst 32, Wartburg 30, Bridgewater (Va.) 15, George Fox 10, Thomas More 8, Rowan, Illinois Wesleyan 6, Christopher Newport 5, Shenandoah 4, Washington and Jefferson 3, Eastern Connecticut 3, Saint Joseph's (Me.) 2, Penn State-Behrend 2, La Roche 1, Texas Lutheran 1.
The D3baseball.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.