Through games of Sunday March 24, 2013
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Linfield (9) | 18-3 | 575 | 6 |
| 2 | Cortland State (5) | 13-4 | 553 | 3 |
| 3 | Trinity (Texas) (7) | 23-5 | 552 | 2 |
| 4 | Salisbury (2) | 15-4 | 526 | 1 |
| 5 | Marietta (1) | 9-4 | 485 | 4 |
| 6 | Kean (1) | 13-4 | 475 | 8 |
| 7 | St. Thomas | 9-4 | 435 | 5 |
| 8 | Christopher Newport | 20-7-1 | 414 | 7 |
| 9 | Ramapo | 10-1 | 405 | 13 |
| 10 | Wheaton (Mass.) | 8-4 | 371 | 10 |
| 11 | St. Joseph's (Maine) | 7-2 | 361 | 9 |
| 12 | Shenandoah | 14-4 | 279 | 11 |
| 13 | Keystone | 13-5 | 277 | 14 |
| 14 | Texas-Tyler | 20-6 | 272 | 15 |
| 15 | UW-Whitewater | 6-2 | 270 | 16 |
| 16 | Manchester | 13-2-1 | 178 | 22 |
| 17 | Johns Hopkins | 14-2 | 173 | rv |
| 18 | Webster | 9-5 | 171 | 19 |
| 19 | Augustana | 12-2 | 155 | 21 |
| 20 | Western New England | 6-4 | 154 | 12 |
| 21 | Haverford | 12-0 | 144 | rv |
| 22 | Birmingham-Southern | 17-8 | 132 | 17 |
| 23 | UW-Stevens Point | 5-2 | 95 | 20 |
| 24 | UW-Oshkosh | 11-1 | 79 | rv |
| 25 | Huntingdon | 16-6 | 55 | rv |
Dropped out: No. 18 UW-La Crosse, No. 23 Rowan, No. 24
Ill. Wesleyan, No. 25 Washington and Jefferson
Others receiving votes: UW.-La Crosse 50, Cal
Lutheran 47, St. Scholastica 45, Rowan 43, Pomona-Pitzer 37,
Concordia (Ill.) 36, Eastern Conn. St. 28, Spalding 24, Washington
(Mo.) 19, Bridgewater (Va.) 19, St. Joseph's (Brkln) 18, Suffolk
18, Wartburg 18, Wittenberg 18, Neumann 15, Ill. Wesleyan 15,
Baldwin Wallace 14, Adrian 11, Millsaps 9, Bridgewater St. 8, Texas
Lutheran 7, Case Western Reserve 6, MIT 5, Aurora 4, La Roche 4,
Mount Union 4, Otterbein 3, Elmhurst 3, Ithaca 3, Misericordia 3,
Tufts 1.
The D3baseball.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.