Through games of Sunday May 8, 2016
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Cortland (23) | 37-5 | 623 | 1 |
| 2 | Randolph-Macon (2) | 32-6-1 | 565 | 2 |
| 3 | Trinity (Texas) | 35-7 | 563 | 3 |
| 4 | UW-La Crosse | 31-8 | 544 | 4 |
| 5 | Birmingham-Southern | 37-11 | 521 | 5 |
| 6 | Emory | 30-10 | 467 | 6 |
| 7 | Oswego State | 32-9 | 415 | 7 |
| 8 | Ramapo | 33-10-1 | 384 | 9 |
| 9 | Shenandoah | 32-10 | 365 | 8 |
| 10 | Salisbury | 25-10 | 351 | 10 |
| 11 | Southern Maine | 29-11 | 347 | 19 |
| 12 | La Roche | 32-8 | 305 | 18 |
| 13 | North Central (Ill.) | 28-8 | 298 | 12 |
| 14 | Cal Lutheran | 31-11 | 249 | 24 |
| 15 | UW-Whitewater | 27-12 | 248 | 11 |
| 16 | Wartburg | 31-9 | 223 | 20 |
| 17 | Occidental | 32-10 | 219 | 13 |
| 18 | TCNJ | 30-10 | 195 | 16 |
| 19 | Concordia-Chicago | 29-11 | 173 | 14 |
| 20 | Whitworth | 29-11 | 163 | 21 |
| 21 | Keystone | 30-9 | 133 | 22 |
| 22 | Buena Vista | 31-9 | 129 | 23 |
| 23 | Frostburg State | 30-12 | 119 | 17 |
| 24 | St. Thomas | 25-13 | 77 | 15 |
| 25 | Wheaton (Mass.) | 30-11 |
61 | rv |
Dropped out: No. 25 Grinnell.
Others receiving votes: Tufts 60, St. John Fisher 53, Misericordia 47, St. Scholastica 36, Otterbein 32, Wooster 28, Grinnell 24, Marietta 16, Case Western Reserve 15, McDaniel 14, Centenary (La.) 10, Western New England 7, Texas Lutheran 5, Webster 4, Texas-Tyler 3, Johns Hopkins 3, Denison 2, Hardin-Simmons 2, Haverford 2, Ohio Wesleyan 2, Amherst 2, Castleton 1, Endicott 1, LaGrange 1.
The D3baseball.com/NCBWA Top 25 is voted on by a panel of 25 Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.