Through games of Sunday March 27, 2016
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Trinity (Texas) (17) | 23-4 | 611 | 1 |
| 2 | Cortland (5) | 18-3 | 577 | 2 |
| 3 | Ramapo | 13-0-1 | 551 | 4 |
| 4 | UW-Whitewater (3) | 8-0 | 530 | 8 |
| 5 | Randolph-Macon | 18-3-1 | 507 | 6 |
| 6 | Birmingham-Southern | 20-6 | 453 | 3 |
| 7 | Emory | 20-7 | 449 | 7 |
| 8 | Whitworth | 20-4 | 421 | 10 |
| 9 | Shenandoah | 16-5 | 415 | 9 |
| 10 | Rutgers-Camden | 10-2 | 338 | 15 |
| 11 | Christopher Newport | 18-5 | 337 | 14 |
| 12 | Salisbury | 13-6 | 294 | 11 |
| 13 | Oswego State | 13-3 | 232 | 19 |
| 14 | Southern Maine | 6-4 | 220 | 5 |
| 15 | Texas-Tyler | 18-8 | 215 | 17 |
| 16 | Centenary (La.) | 17-6 | 213 | 12 |
| 17 | Wooster | 8-2 | 174 | 22 |
| 18 | UW-La Crosse | 6-4 | 161 | 13 |
| 19 | North Central (Ill.) | 11-0 | 153 | rv |
| 20 | TCNJ | 13-1 | 137 | rv |
| 21 | St. Thomas | 7-3 | 121 | 20 |
| 22 | Frostburg State | 11-7 | 103 | 16 |
| 23 | Amherst | 9-2 | 97 | rv |
| 24 | McDaniel | 17-1 | 95 | rv |
| 25 | Buena Vista | 9-3 | 72 | 23 |
Dropped out: No. 18 Mary Washington, No. 21 Western New England, No. 24 UW-Stevens Point. No. 25 Concordia-Chicago.
Others receiving votes: Mary Washington 71, Berry 67, Occidental 50, Concordia Chicago 49, Western New England 40, Keystone 38, Saint Mary's (Minn.) 27, Concordia Texas 24, Luther 23, Wartburg 22, Marietta 22, Swarthmore 19, Wheaton (Mass.) 18, Webster 14 Pacific (Ore.) 14, Ohio Northern 13, Eastern Conn. St. 12, Misericordia 11, Mitchell 11, Maryville (Tenn.) 11, Suffolk 10, Redlands 9, Roanoke 7, La Roche 7, Macalester 6, Endicott 6, Ferrum 6, Elmhurst 5, Piedmont 5, Washington College 5, Wesleyan (Conn.) 4, Haverford 3, La Grange 3, Thiel 3, Earlham 2, Brockport 1, Elms 1, Mt. St. Joseph 1, N.C. Wesleyan 1, Ohio Wesleyan 1, Texas Lutheran 1.
The D3baseball.com Top 25 is voted on by a panel of 25 Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.