Through games of Sunday April 3, 2016
| # | School (1st votes) | Rec | Pts | Prev. |
| 1 | Trinity (Texas) (11) | 25-5 | 594 | 1 |
| 2 | Cortland (6) | 21-4 | 591 | 2 |
| 3 | UW-Whitewater (8) | 11-0 | 572 | 4 |
| 4 | Ramapo | 16-1-1 | 564 | 3 |
| 5 | Randolph-Macon | 20-5-1 | 497 | 5 |
| 6 | Birmingham-Southern | 23-7 | 486 | 6 |
| 7 | Emory | 23-7 | 471 | 7 |
| 8 | Shenandoah | 19-6 | 421 | 9 |
| 9 | Oswego State | 17-3 | 367 | 13 |
| 10 | Whitworth | 21-6 | 344 | 8 |
| 11 | Salisbury | 15-7 | 335 | 12 |
| 12 | Centenary (La.) | 21-6 | 262 | 16 |
| 13 | Texas-Tyler | 18-8 | 240 | 15 |
| 14 | Christopher Newport | 19-8 | 227 | 11 |
| 15 | UW-La Crosse | 10-5 | 209 | 18 |
| 16 | Frostburg State | 15-7 | 204 | 22 |
| 17 | Amherst | 12-3 | 189 | 23 |
| 18 | North Central (Ill.) | 12-2 | 175 | 19 |
| 19 | St. Thomas | 9-3 | 166 | 21 |
| 20 | Buena Vista | 13-3 | 161 | 25 |
| 21 | Wooster | 9-3 | 157 | 17 |
| 22 | McDaniel | 20-2 | 136 | 24 |
| 23 | Southern Maine | 7-5 | 101 | 14 |
| 24 | Occidental | 20-5 | 90 | rv |
| 25 | Rutgers-Camden | 10-6 | 86 | 10 |
Dropped out: No. 20 TCNJ
Others receiving votes: Berry 49, Luther 37, Mary Washington 36, Misericordia 33, Cal Lutheran 27, Wheaton (Mass.) 26, Western New England 25, Concordia Texas 24, Concordia Chicago 23, TCNJ 21, Wesleyan 18, Earlham 17, Keystone 17, Webster 14, Pacific (Ore.) 14, LaGrange 14, Suffolk 12, Marietta 11, George Fox 9, Mitchell 9, La Roche 9, Piedmont 8, Washington College 7, Ferrum 5, N.C. Wesleyan 5, Elms 3, Rose-Hulman 3, Manhattanville 2, Endicott 2, St. John Fisher 2, Alma 1.
The D3baseball.com Top 25 is voted on by a panel of 25 Sports Information Directors and media members from across the country, and is published weekly. Full members of NCAA Division III are eligible.